PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc09g025310.2.1
Common NameLOC101261358
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 271aa    MW: 31368.2 Da    PI: 5.3867
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc09g025310.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.84.4e-49101381129
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrF P+deelv++yL kk++++++    ++ e+d++++ePw+Lp+ +k +++ewyfFs rd+kyatg r+nrat sgyWkatgkd++
  Solyc09g025310.2.1  10 LPPGFRFYPSDEELVCHYLFKKIANEDVLK-GTLIEIDLHTCEPWQLPEVAKLNSSEWYFFSFRDRKYATGFRTNRATISGYWKATGKDRT 99 
                         79************************9655.6799*************87788899*********************************** PP

                 NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                         v++  +++ vg++ktLvfy +rap+g kt W+mhe+rle
  Solyc09g025310.2.1 100 VVDPkTRSIVGMRKTLVFYMNRAPNGIKTGWIMHEFRLE 138
                         **9856677***************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.71E-608156IPR003441NAC domain
PROSITE profilePS5100557.20810156IPR003441NAC domain
PfamPF023655.4E-2711137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MGLRDIGATL PPGFRFYPSD EELVCHYLFK KIANEDVLKG TLIEIDLHTC EPWQLPEVAK  60
LNSSEWYFFS FRDRKYATGF RTNRATISGY WKATGKDRTV VDPKTRSIVG MRKTLVFYMN  120
RAPNGIKTGW IMHEFRLENP HIPPKEDWVL CRVFYKAKVE NNNNNDNNNT FSNTQNMYEV  180
GVNTSPNIDQ SHIALPYTAI SQSQKLFDLL EPNNNQSSYL QLMSQEMKEP QSNDEMVEND  240
EYGFLLDMNF EDPNIQDGSR SAFEHWGHVI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-48915616165NO APICAL MERISTEM PROTEIN
1ut4_B1e-48915616165NO APICAL MERISTEM PROTEIN
1ut7_A1e-48915616165NO APICAL MERISTEM PROTEIN
1ut7_B1e-48915616165NO APICAL MERISTEM PROTEIN
4dul_A1e-48915616165NAC domain-containing protein 19
4dul_B1e-48915616165NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004246952.10.0PREDICTED: NAC domain-containing protein 21/22-like
SwissprotQ84TE62e-63NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLK4CSJ20.0K4CSJ2_SOLLC; Uncharacterized protein
STRINGSolyc09g025310.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18822466
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.17e-93NAC domain containing protein 74
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]